Global Analysis of Non-coding Small RNAs in Arabidopsis in Response to Jasmonate Treatment by Deep Sequencing Technology

doi:10.1111/j.1744-7909.2012.01098.x

J Integr Plant Biol. ›› 2012, Vol. 54 ›› Issue (2): 73-86.DOI: 10.1111/j.1744-7909.2012.01098.x

• Plant-environmental Interactions • Previous Articles Next Articles

Global Analysis of Non-coding Small RNAs in Arabidopsis in Response to Jasmonate Treatment by Deep Sequencing Technology

Bosen Zhang^1,2, Zhiping Jin^1,3* and Daoxin Xie^1,2

¹School of Life Sciences, Tsinghua University, Beijing 100084, China
²MOE Key Laboratory of Bioinformatics, Tsinghua University, Beijing 100084, China
³State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China

Received:2011-08-14 Accepted:2011-12-22 Published:2012-01-06
About author: ^*Corresponding author. Tel: 010 6484 2382; Fax: 010 6487 3428; Email: jinzhiping@genetics.ac.cn

Abstract

Abstract:

In plants, non-coding small RNAs play a vital role in plant development and stress responses. To explore the possible role of non-coding small RNAs in the regulation of the jasmonate (JA) pathway, we compared the non-coding small RNAs between the JA-deficient aos mutant and the JA-treated wild type Arabidopsis via high-throughput sequencing. Thirty new miRNAs and 27 new miRNA candidates were identified through bioinformatics approach. Forty-nine known miRNAs (belonging to 24 families), 15 new miRNAs and new miRNA candidates (belonging to 11 families) and 3 tasiRNA families were induced by JA, whereas 1 new miRNA, 1 tasiRNA family and 22 known miRNAs (belonging to 9 families) were repressed by JA.

Zhang B, Xie D, Jin Z (2012) Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology. J. Integr. Plant Biol. 54(2), 73–86.

Key words: Non-coding small RNAs, jasmonate, Arabidopsis, Solexa deep sequencing

Bosen Zhang, Zhiping Jin, and Daoxin Xie. Global Analysis of Non-coding Small RNAs in Arabidopsis in Response to Jasmonate Treatment by Deep Sequencing Technology[J]. J Integr Plant Biol., 2012, 54(2): 73-86.

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Global Analysis of Non-coding Small RNAs in Arabidopsis in Response to Jasmonate Treatment by Deep Sequencing Technology

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