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Institute of Biotechnology Research,
Chinese Academy of Agricultural Sciences, Beijing 100081, China
E-mail: guxiaofeng@caas.cn
https://www.bricaas.cn/rctd/rcdw/yjy/a5bc2488292f475c9c896983e9fd241b.htm
Area of expertise: Epigenetic regulation of yield and stress resistance in crop；Epigenetic intelligent design in crop
Selected Publications:
Yang, L., Zhang, P., Wang, Y., Hu, G., Guo, W., Gu, X., Pu, L. (2022). Plant synthetic epigenomic engineering for crop improvement. Sci. China Life Sci. 65: 2191–2204.
Qu, R., Zhang, P., Liu, Q., Wang, Y., Guo, W., Du, Z., Li, X., Yang, L., Yan, S., Gu, X. (2022). Genome-edited ATP BINDING CASSETTE B1 transporter SD8 knockouts show optimized rice architecture without yield penalty. Plant Commun. 3: 100347.
Wang, Y., Zhang, P., Guo, W., Liu, H., Li, X., Zhang, Q., Du, Z., Hu, G., Han, X., Pu, L., Tian, J., Gu, X. (2021). A deep learning approach to automate whole‐genome prediction of diverse epigenomic modifications in plants. New Phytol. 232: 880–897.
Guo, W., Liu, H., Wang, Y., Zhang, P., Li, D., Liu, T., Zhang, Q., Yang, L., Pu, L., Tian, J., Gu, X. (2022). SMOC: a smart model for open chromatin region prediction in rice genomes. J. Genet. Genomics 49: 514–517.
Zhang, P., Zhu, C., Geng, Y., Wang, Y., Yang, Y., Liu, Q., Guo, W., Chachar, S., Riaz, A., Yan, S., Yang, L., Yi, K., Wu, C., Gu, X. (2021). Rice and Arabidopsis homologs of yeast CHROMOSOME TRANSMISSION FIDELITY PROTEIN 4 commonly interact with Polycomb complexes but exert divergent regulatory functions. Plant Cell 33: 1417–1429.
Liu, Q., Liang, Z., Feng, D., Jiang, S., Wang, Y., Du, Z., Li, R., Hu, G., Zhang, P., Ma, Y., Lohmann, J. U., Gu X. (2021). Transcriptional landscape of rice roots at the single cell resolution. Mol. Plant 14: 384–394.
Liang, Z., Zhang, Q., Ji, C., Hu, G., Zhang, P., Wang, Y., Yang, L., Gu X. (2021). Reorganization of the 3D chromatin architecture of rice genomes during heat stress. BMC Bio. 19: 1–10.
Zhang, P., Wang, Y., Gu X. (2020). RNA 5-methylcytosine controls plant development and environmental adaptation. Trends Plant Sci. 25: 954–958.
Zhang, P., Wang, Y., Chachar, S., Tian, J., Gu, X. (2020). eRice: a refined epigenomic platform for japonica and indica rice. Plant Biotechnol. J. 18: 1642–1644.
Liang, Z., Riaz, A., Chachar, S., Ding, Y., Du, H., Gu, X. (2019). Epigenetic modifications of mRNA and DNA in plants. Mol. Plant 13: 14–30.
Geng, Y., Zhang, P., Liu, Q., Wei, Z., Riaz, A., Chachar, S., Gu, X. (2019). Rice homolog of Sin3-associated polypeptide 30, OsSFL1, mediates histone deacetylation to regulate flowering time during short days. Plant Biotechnol. J. 18: 325–327.
Zhang, Q., Liang, Z., Cui, X., Ji, C., Li, Y., Zhang, P., Liu, J., Riaz, A., Yao, P., Liu, M., Wang, Y., Lu, T., Yu, H., Yang, D., Zheng, H., Gu, X. (2018). N6-methyladenine DNA methylation in Japonica and Indica rice genomes and its association with gene expression, plant development and stress responses. Mol. Plant 11: 1492–1508.
Liang, Z., Geng, Y., Gu, X. (2018). Adenine Methylation: New epigenetic marker of DNA and mRNA. Mol. Plant 11: 1219–1221.
Liang, Z., Shen, L., Cui, X., Bao, S., Geng, Y., Yu, G., Liang, F., Xie, S., Lu, T., Gu, X., Yu, H. (2018). DNA N6-adenine methylation in Arabidopsis thaliana. Dev. Cell 45: 406–416.
Liang, Z., Yu, G., Liu, J., Geng, Y., Mao, J., Wang, D., Zhou, J., Gu, X. (2018). The N6-adenine methylation in yeast genome, profiled by single-molecule technology. J. Genet. Genomics 45: 223–225.
Cui, X., Liang, Z., Shen, L., Zhang, Q., Bao, S., Geng, Y., Zhang, B., Leo, V., Vardy, L. A., Lu, T., Gu, X., Yu, H. (2017). 5-Methylcytosine RNA methylation in Arabidopsis thaliana. Mol. Plant 10: 1387–1399.
Zhang, Z., Cui, X., Wang, Y., Wu, J., Gu, X., Lu, T. (2017). The RNA editing factor WSP1 is essential for chloroplast development in rice. Mol. Plant 10: 86–98.
Sun, X., Zhang, Z., Wu, J., Cui, X., Feng, D., Wang, K., Xu, M., Zhou, L., Han, X., Gu, X., Lu, T. (2016). The Oryza sativa regulator HDR1 associates with the kinase OsK4 to control photoperiodic flowering. PLoS Genet. 12: e1005927.
Gu, X., Xu, T., He, Y. (2014). A histone H3 lysine-27 methyltransferase complex represses lateral root formation in Arabidopsis thaliana. Mol. Plant 7: 977–988.
Gu, X., Wang, Y., He, Y. (2013). Photoperiodic regulation of flowering time through periodic histone deacetylation of the florigen gene FT. PLoS Biol. 11: e1001649.
Gu, X., Le, C., Wang, Y., Li, Z., Jiang, D., Wang, Y., He, Y. (2013). Arabidopsis FLC clade members form flowering-repressor complexes coordinating responses to endogenous and environmental cues. Nat. Commun. 4: 1947.
Gu, X., Jiang, D., Yang, W., Jacob, Y., Michaels, S. D., He, Y. (2011). Arabidopsis homologs of retinoblastoma-associated protein 46/48 associate with a histone deacetylase to act redundantly in chromatin silencing. PLoS Genet. 7: e1002366.
Gu, X., Jiang, D., Wang, Y., Bachmair, A., He, Y. (2009). Repression of the floral transition via histone H2B monoubiquitination. Plant J. 57: 522–533.
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