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Agricultural Genomics Institute at Shenzhen
Chinese Academy of Agricultural Sciences, Shenzhen, China
E-mail: shanglianguang@caas.cn
https://www.agis.org.cn/kydw/kydwyjzx/zwjyzyjzx/94d48f75df6943cb9ecc5d97ffa79f7c.htm
Area of expertise: Wild rice, QTL, pan-genome, population genetics, multiomics, salt tolerance, molecular breeding
Selected Publications:
Shang, L., Li, X., He, H., Yuan, Q., Song, Y., Wei, Z., Lin, H., Hu, M., Zhao, F., Zhang, C., Li, Y., Gao, H. Wang, T., Liu, X. Zhang, H., Zhang, Y., Cao, S., Yu, X., Zhang, B.T., Zhang, Y., Tan, Y., Qin, M., Ai, C., Yang, Y., Zhang, B., Hu, Z., Wang, H, Lv, Y., Wang, Y., Ma, J., Wang, Q., Lu, H., Wu, Z., Liu, S., Sun, Z., Zhang, H., Guo, L., Li, Z., Zhou, Y., Li, J., Zhu, Z., Xiong, G, Ruan, J., Qian, Q. (2022). A super pan-genomic landscape of rice. Cell Res. 32: 878–896.
Shang, L., He, W., Wang, T., Yang, Y., Xu, Q., Zhao, X., Yang, L., Zhang, H., Li, X., Lv, Y., Chen, W., Cao, S., Wang, X., Zhang, B., Liu, X., Yu, X., He, H., Wei, H., Leng, Y., Shi, C., Guo, M., Zhang, Z., Zhang, B.T., Yuan, Q., Qian, H., Cao, X., Cui, Y., Zhang, Q., Dai, X., Liu, C., Guo, L., Zhou, Y., Zheng, X., Ruan, J., Cheng, Z., Pan, W., Qian, Q. (2023). A complete assembly of the rice Nipponbare reference genome. Mol. Plant 16: 1232–1236.
He, H., Leng, Y., Cao, X., Zhu, Y., Li, X., Yuan, Q., Zhang, B., He, W., Wei, H., Liu, X., Xu, Q., Guo, M., Zhang, H., Yang, L., Lv, Y., Wang, X., Shi, C., Zhang, Z., Chen, W., Zhang, B.T., Wang, T., Yu, X., Qian, H., Zhang, Q., Dai, X., Liu, C., Cui, Y., Wang, Y., Zheng, X., Xiong, G., Zhou, Y., Qian, Q., Shang, L. (2024). The pan-tandem repeat map highlights multiallelic variants underlying gene expression and agronomic traits in rice. Nat. Commun. 15: 7291.
Zhang, H., Chen, W., Zhu, D., Zhang, B.T., Xu, Q., He, H., Dai, X., Li, Y., He, W., Lv, Y., Yang, L., Cao, X., Cui, Y., Leng, Y., Wei, H., Liu, X., Zhang, B., Shi, C., Wang, X. Guo, M., Zhang, Z., Li, X., Liu, C., Yuan, Q., Wang, T., Yu, X., Qian, H., Zhang, Q., Chen, D., Hu, G., Qian, Q., Shang, L. (2024). Population-level exploration of alternative splicing and its unique role in controlling agronomic traits of rice. Plant Cell 36: 4372–4387.
Wang, T., He, W., Li, X., Zhang, C., He, H., Yuan, Q., Zhang, B., Zhang, H., Leng, Y., Wei, H., Xu, Q., Shi, C., Liu, X., Guo, M., Wang, X., Chen, W., Zhang, Z., Yang, L., Lv, Y., Qian, H., Zhang, B.T., Yu, X., Liu, C., Cao, X., Cui, Y., Zhang, Q., Dai, X., Guo, L., Wang, Y., Zhou, Y., Ruan, J., Qian, Q., Shang, L. (2023). A rice variation map derived from 10548 rice accessions reveals the importance of rare variants. Nucleic Acids Res. 51: 10924–10933.
Wei, H., Wang, X., Zhang, Z., Yang, L., Zhang, Q., Li, Y., He, H., Chen, D., Zhang, B., Zheng, C., Leng, Y., Cao, X., Cui, Y., Shi, C., Liu, Y., Lv, Y., Ma, J., He, W., Liu, X., Xu, Q., Yuan, Q., Yu, X., Wang, T., Qian, H., Li, X., Zhang, B.T., Zhang, H., Chen, W., Guo, M., Dai, X., Wang, Y., Zheng, X., Guo, L., Xie, X., Qian, Q., Shang, L. (2024). Uncovering key salt-tolerant regulators through a combined eQTL and GWAS analysis using the super pan-genome in rice. Natl. Sci. Rev. 11: nwae043.
Li X., Dai, X., He, H., Lv, Y., Yang, L., He, W., Liu, C., Wei, H., Liu, X., Yuan, Q., Wang, X., Wang, T., Zhang, B.T., Zhang, H., Chen, W., Leng, Y., Yu, X., Qian, H., Zhang, B., Guo, M., Zhang, Z., Shi, C., Zhang, Q. Cui, Y., Xu, Q., Cao, X., Chen, D., Zhou, Y., Qian, Q., Shang, L. (2024). A pan-TE map highlights transposable elements underlying domestication and agronomic traits in Asian rice. Natl. Sci. Rev. 11: nwae188.
He, W., He, H., Yuan, Q., Zhang, H., Li, X., Wang, T., Yang, Y., Yang, L., Yang, Y., Liu, X., Wei, H., Zhang, H., Zhang, B., Guo, M., Leng, Y., Shi, C., Lv, Y., Chen, W., Wang, X., Zhang, Z., Yu, B., Zhang, B.T., Xu, Q., Qian, H., Zhou, Y., Wang, S., Qian, Q., Shang, L. (2024). Widespread inversions shape the genetic and phenotypic diversity in rice. Sci. Bull. 69: 593–596.
Cui, Y., Lin, Y., Wei, H., Pan, Y., He, H., Qian, H. Yang, L. Cao, X., Zhang, Z., Zeng X., Wang, T., He, W., Liu, X., Shi, C., Yuan, Q., Yu, X., Chen, L., Wang, F., Zhu, Y., Qian, Q., Shang, L. (2024). Identification of salt tolerance-associated presence-absence variations in the OsMADS56 gene through the integration of DEGs dataset and eQTL analysis. New Phytol. 243: 833–838.
Lv, Y., Liu, C., Li, X., Wang, Y., He, H., He, W., Chen, W., Yang, L., Dai, X., Cao, X., Yu, X., Liu, J., Zhang, B., Wei, H., Zhang, H., Qian, H., Shi, C., Leng, Y., Liu, X., Guo, M., Wang, X., Zhang, Z., Wang, T., Zhang, B.T., Xu, Q., Cui, Y., Zhang, Q., Yuan, Q., Jahan, N.S., Ma, J., Zheng, X., Zhou, Y., Qian, Q., Guo, L., Shang, L. (2024). A centromere map based on super pan-genome highlights the structure and function of rice centromeres. J. Integr. Plant Biol. 66: 196–207.
He, W., Li, X., Qian, Q., Shang, L. (2025). The developments and prospects of plant super-pangenomes: Demands, approaches, and applications. Plant Commun. 6: 101230.
Lin, Y., Zhu, Y., Cui, Y., Qian, H., Yuan, Q., Chen, R., Lin, Y., Chen, J., Zhou, X., Shi, C., He, H., Hu, T., Gu, C., Yu, X., Zhu, X., Wang, Y., Qian, Q., Zhang, C., Wang, F., Shang, L. (2023). Identification of natural allelic variation in TTL1 controlling thermotolerance and grain size by a rice super pan-genome. J. Integr. Plant Biol. 65: 2541–2551.
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