J Integr Plant Biol. ›› 2025, Vol. 67 ›› Issue (9): 2294-2319.DOI: 10.1111/jipb.13951

• Review Article • Previous Articles     Next Articles

Decoding alternative splicing: A key player in plant biotic stress resistance

Jiayu Zhu1†, Wenbin Guo2†, Jianping Chen1 and Zongtao Sun1*   

  1. 1. State Key Laboratory for Quality and Safety of Agro‐Products, Key Laboratory of Biotechnology in Plant Protection of MARA, Zhejiang Key Laboratory of Green Plant Protection, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
    2. Higentec Breeding Innovation (ZheJiang) Co. Ltd., Lishui 323000, China

    These authors contributed equally to this work.
    *Correspondence: Zongtao Sun (sunzongtao@nbu.edu.cn)
  • Received:2025-02-21 Accepted:2025-05-23 Online:2025-06-20 Published:2025-09-01
  • Supported by:
    This work was funded by the National Key Research and Development Program of China (2021YFD1400500), National Natural Science Foundation of China (U23A6006, 32272555), and Ningbo Natural Science Foundation (2023Z124).

Abstract: Alternative splicing (AS) is a crucial post-transcriptional mechanism in plants, significantly contributing to the diversification of biological processes and adaptive responses. Distinct splice isoforms are generated by exon skipping (ES), intron retention (IR) and other mechanisms, enabling plants to adapt to a range of biotic stresses, including those posed by bacteria, fungi and viruses. Advances in bioinformatics have greatly improved the detection and characterization of AS events, revealing their critical roles in plant immunity. This review highlights the involvement of AS in regulating RNA interference (RNAi), hormone signaling pathways, and immune responses such as pattern-triggered immunity (PTI) and effector-triggered immunity (ETI). In addition, pathogens exploit AS to produce effectors that subvert plant immunity. Beyond its role in natural immunity, AS also holds promise for pesticide development, offering opportunities to enhance plant disease resistance by targeting pest-associated or immunity-related genes. Future research on AS under biotic stress is expected to uncover novel regulatory mechanisms and provide new strategies for crop improvement and sustainable agriculture.

Key words: alternative splicing, biotic stress, effector proteins, hormone signaling pathways, pesticide development, plant immunity, RNA interference

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