Functional Omics and Systems Biology

Wei X, Chen M, Zhang Q, Gong J, Liu J, Yong K, Wang Q, Fan J, Chen S, Hua H, Luo Z, Zhao X, Wang X, Li W, Cong J, Yu X, Wang Z, Huang R, Chen J, Zhou X, Qiu J, Xu P, Murray J, Wang H, Xu Y, Xu C, Xu G, Yang J, Han B, Huang X. (2024). Genomic investigation of 18,421 lines reveals the genetic architecture of rice. Science 385: 44

Shi J, Tian Z, Lai J, Huang X. (2023). Plant pangenomes and its applications. Mol. Plant 16: 168-186

Wang Q, Fan J, Cong J, Chen M, Qiu J, Liu J, Zhao X, Huang R, Liu H, Huang X. (2022). Natural variation of ZmLNG1 alters organ shapes in maize. New Phytol. 237: 471-482

Huang X, Huang S, Han B, Li J. (2022). The integrated genomics of crop domestication and breeding. Cell 185: 2828-2839

Wei X, Qiu J, Yong K, Fan J, Zhang Q, Hua H, Liu J, Wang Q, Olsen K M, Han B, Huang X. (2021). A quantitative genomics map of rice provides genetic insights and guides breeding. Nat. Genet. 53: 243-253

Chen M, Fan W, Ji F, Hua H, Liu J, Yan M, Ma Q, Fan J, Wang Q, Zhang S, Liu G, Sun Z, Tian C, Zhao F, Zheng J, Zhang Q, Chen J, Qiu J, Wei X, Chen Z, Zhang P, Pei D, Yang J, Huang X. (2021). Genome-wide identification of agronomically important genes in outcrossing crops using OutcrossSeq. Mol. Plant 14: 556-570

Zhang W, Liu J, Zhang Y, Qiu J, Li Y, Zheng B, Hu F, Dai S, Huang X. (2020). A high-quality genome sequence of alkaligrass provides insights into halophyte stress tolerance. Sci. China Life Sci. 63: 1269-1282

Liu J, Li M, Zhang Q, Wei X, Huang X. (2020). Exploring the molecular basis of heterosis for plant breeding. J. Integr. Plant Biol. 62: 287-298

Liu H, Wang Q, Chen M, Ding Y, Yang X, Liu J, Li X, Zhou C, Tian Q, Lu Y, Fan D, Shi J, Zhang L, Kang C, Sun M, Li F, Wu Y, Zhang Y, Liu B, Zhao XY, Feng Q, Yang J, Han B, Lai J, Zhang X-S, Huang X. (2020). Genome-wide identification and analysis of heterotic loci in three maize hybrids. Plant Biotech. J. 18: 185-194

Zhao Qiang, Feng Q, Lu H, Li Y, Wang A, Tian Q, Zhan Q, Lu Y, Zhang L, Huang T, Wang Y, Fan D, Zhao Y, Wang Z, Zhou C, Chen J, Zhu C, Li W, Weng Q, Xu Q, Wang ZX, Wei X, Han B, Huang X. (2018). Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice. Nat. Genet. 50: 278-284

Huang X, Yang S, Gong J , Zhao Q, Feng Q, Zhan Q, Zhao Y, Li W, Cheng B, Xia J, Chen N, Huang T, Zhang L, Fan D, Chen J, Zhou C, Lu Y, Weng Q, Han B. (2016).Genomic architecture of heterosis for yield traits in rice. Nature 537: 629-633

Wei X, Liu K, Zhang Y, Feng Q, Wang L, Zhao Y, Li D, Zhao Q, Zhu X, Zhu X, Li W, Fan D, Gao Y, Lu Y, Zhang X, Tang X, Zhou C, Zhu C, Liu L, Zhong R, Tian Q, Wen Z, Weng Q, Han B, Huang X, Zhang X. (2015). Genetic discovery for oil production and quality in sesame. Nat. Commun. 6: 8609