J Integr Plant Biol ›› 2011, Vol. 53 ›› Issue (1): 63-73.DOI: 10.1111/j.1744-7909.2010.01012.x

• Molecular Physiology • Previous Articles     Next Articles

Sequence Information on Simple Sequence Repeats and Single Nucleotide Polymorphisms through Transcriptome Analysis of Mungbean

Kyaw Thu Moe1, Jong-Wook Chung1,2, Young-Il Cho1, Jung-Kyung Moon2, Ja-Hwan Ku2, Jin-Kyo Jung2, Jungran Lee2 and Yong-Jin Park1,3*   

  1. 1Department of Plant Resources, College of Industrial Sciences, Kongju National University, Yesan 340-702, Republic of Korea
    2The Rural Development Administration (RDA), Suwon 441-100, Republic of Korea
    3Legume Bio-Resource Center of Green Manure (LBRCGM), Kongju National University, Yesan 340-702, Republic of Korea
  • Received:2010-07-01 Accepted:2010-10-26 Published:2010-11-18
  • About author:*Corresponding author. Tel: +82 41 330 1201 Fax: +82 41 330 1209 E-mail: yjpark@kongju.ac.kr

Abstract:

Mungbean (Vigna radiata (L.) Wilczek) is a unique species in its ability to fix atmospheric nitrogen, with early maturity, and relatively good drought resistance. We used 454 sequencing technology for transcriptome sequencing. A total of 150 159 and 142 993 reads produced 5 254 and 6 374 large contigs (≥500 bp) with an average length of 833 and 853 for Sunhwa and Jangan, respectively. Functional annotation to known sequences yielded 41.34% and 41.74% unigenes for Jangan and Sunhwa. A higher number of simple sequence repeat (SSR) motifs was identified in Jangan (1 630) compared with that of Sunhwa (1 334). A similar SSR distribution pattern was observed in both varieties. A total of 8 249 single nucleotide polymorphisms (SNPs) and indels with 2 098 high-confidence candidates were identified in the two mungbean varieties. The average distance between individual SNPs was ∼860 bp. Our report demonstrates the utility of transcriptomic data for implementing a functional annotation and development of genetic markers. We also provide large resource sequence data for mungbean improvement programs.

Moe KT, Chung JW, Cho YI, Moon JK, Ku JH, Jung JK, Lee J, Park YJ (2011) Sequence information on simple sequence repeats and single nucleotide polymorphisms through transcriptome analysis of mungbean. J. Integr. Plant Biol. 53(1), 63–73.

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