J Integr Plant Biol.

• Research Article •    

Clonal longevity and the enigmatic flowering of woody bamboos are associated with rates of protein evolution

Xin Wang1,2, Zhi‐Hua Zeng1,2, Peng‐Fei Ma1, Yun‐Long Liu1,3, Hua‐Ying Sun4, Hong Wang1, Hong Ma5, De‐Zhu Li1,3,6* and Wei Zhou1,2,6,7*   

  1. 1. Germplasm Bank of Wild Species & Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, the Chinese Academy of Sciences, Kunming 650201, China
    2. University of Chinese Academy of Sciences, Beijing 100049, China
    3. Center for Interdisciplinary Biodiversity Research & College of Forestry, Shandong Agricultural University, Tai'an 271018, China
    4. School of Chinese Materia Medica, Yunnan University of Chinese Medicine, Kunming 650500, China
    5. Department of Biology, the Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802, USA
    6. Lijiang Forest Biodiversity National Observation and Research Station, Kunming Institute of Botany, the Chinese Academy of Sciences, Lijiang 674100, China
    7. Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, the Chinese Academy of Sciences, Kunming 650201, China

    *Correspondences: De‐Zhu Li (dzl@mail.kib.ac.cn); Wei Zhou (zhouwei@mail.kib.ac.cn; Dr. Zhou is fully responsible for the distribution of all materials associated with this article)
  • Received:2025-02-21 Accepted:2025-07-22 Online:2025-08-13
  • Supported by:
    This research was supported by the National Natural Science Foundation of China (32120103003 and 32470394), the Top‐notch Young Talents Project of Yunnan Province (YNWR‐QNBJ‐2019‐203), and the Key Basic Research Program of Yunnan Province (202201AS070057 and 202101BC070003). Computational resources were supported by the Scientific Data Center, Kunming Institute of Botany, CAS and Yunnan Province Science and Technology Department (202305AH340005).

Abstract: Rates of protein evolution (dN/dS) vary widely across the tree of life. In plants, both life-history traits and GC-biased gene conversion (gBGC) are thought to contribute to this variation, although disentangling their individual contributions remains a challenge. Using information on variation in life-history traits and molecular data in 148 species from Poaceae subfamilies Bambusoideae (mostly woody) and Pooideae (exclusively herbaceous), we investigated the relative importance of modes of reproduction and the non-selective forces of gBGC on protein evolutionary rates between the two subfamilies. Elevated rates of protein evolution associated with relaxed purifying selection were more evident in woody bamboos than in Pooideae and were better explained by reproductive modes than by traits that are likely proxies of effective population size. Although gBGC slightly reduced protein evolutionary rates in both subfamilies, its contribution had only a limited effect on molecular divergence between the groups. Forward simulations generally supported our empirical results on the influence of reproductive mode on selection and gBGC. Our findings from two sister lineages of the grass family provide evidence for association between protein evolution and life-history traits governing reproductive mode and enhance understanding of molecular evolution in plants with contrasting reproductive strategies.

Key words: life‐history traits, natural selection, Poaceae, protein evolutionary rate, reproductive mode

Editorial Office, Journal of Integrative Plant Biology, Institute of Botany, CAS
No. 20 Nanxincun, Xiangshan, Beijing 100093, China
Tel: +86 10 6283 6133 Fax: +86 10 8259 2636 E-mail: jipb@ibcas.ac.cn
Copyright © 2022 by the Institute of Botany, the Chinese Academy of Sciences
Online ISSN: 1744-7909 Print ISSN: 1672-9072 CN: 11-5067/Q
备案号:京ICP备16067583号-22