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    Potassium and phosphorus transport and signaling in plants
    Yi Wang, Yi-Fang Chen and Wei-Hua Wu
    J Integr Plant Biol 2021, 63 (1): 34-52.  
    doi: 10.1111/jipb.13053
    Abstract (Browse 1881)  |   Save
    Nitrogen (N), potassium (K), and phosphorus (P) are essential macronutrients for plant growth and development, and their availability affects crop yield. Compared with N, the relatively low availability of K and P in soils limits crop production and thus threatens food security and agricultural sustainability. Improvement of plant nutrient utilization efficiency provides a potential route to overcome the effects of K and P deficiencies. Investigation of the molecular mechanisms underlying how plants sense, absorb, transport, and use K and P is an important prerequisite to improve crop nutrient utilization efficiency. In this review, we summarize current understanding of K and P transport and signaling in plants, mainly taking Arabidopsis thaliana and rice (Oryza sativa) as examples. We also discuss the mechanisms coordinating transport of N and K, as well as P and N.
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    Potassium (K) and phosphorus (P) are essential macronutrients for plant growth, development, and crop yield. This review summarizes the current understanding of K and P transport and signaling in plants and discusses the mechanisms coordinating N (nitrogen), K, and P.
      
    PP2A interacts with KATANIN to promote microtubule organization and conical cell morphogenesis
    Huibo Ren, Jinqiu Rao, Min Tang, Yaxing Li, Xie Dang and Deshu Lin
    J Integr Plant Biol 2022, 64 (8): 1514-1530.  
    DOI: 10.1111/jipb.13281
    Abstract (Browse 1851)  |   Save

    The organization of the microtubule cytoskeleton is critical for cell and organ morphogenesis. The evolutionarily conserved microtubule-severing enzyme KATANIN plays critical roles in microtubule organization in the plant and animal kingdoms. We previously used conical cell of Arabidopsis thaliana petals as a model system to investigate cortical microtubule organization and cell morphogenesis and determined that KATANIN promotes the formation of circumferential cortical microtubule arrays in conical cells. Here, we demonstrate that the conserved protein phosphatase PP2A interacts with and dephosphorylates KATANIN to promote the formation of circumferential cortical microtubule arrays in conical cells. KATANIN undergoes cycles of phosphorylation and dephosphorylation. Using co-immunoprecipitation coupled with mass spectrometry, we identified PP2A subunits as KATANIN-interacting proteins. Further biochemical studies showed that PP2A interacts with and dephosphorylates KATANIN to stabilize its cellular abundance. Similar to the katanin mutant, mutants for genes encoding PP2A subunits showed disordered cortical microtubule arrays and defective conical cell shape. Taken together, these findings identify PP2A as a regulator of conical cell shape and suggest that PP2A mediates KATANIN phospho-regulation during plant cell morphogenesis.

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    Cited: Web of Science(4)
    Conical cells that protrude from the petal epidermis represent a striking example of a specialized cell shape. The conserved protein phosphatase PP2A interacts with and dephosphorylates KATANIN to cooperatively regulate cortical microtubule organization during Arabidopsis conical cell morphogenesis.
      
    Maize WI5 encodes an endo‐1,4‐β‐xylanase required for secondary cell wall synthesis and water transport in xylem
    Xiaojiao Hu, Yang Cui, Xiaomin Lu, Weibin Song, Lei Lei, Jinjie Zhu, Jinsheng Lai, Lizhu E and Haiming Zhao
    J Integr Plant Biol 2020, 62 (10): 1607-1624.  
    doi: 10.1111/jipb.12923
    Abstract (Browse 1636)  |   Save

    Water transport from roots to leaves through xylem is important for plant growth and development. Defects in water transport can cause drought stress, even when there is adequate water in the soil. Here, we identified the maize (Zea mays) wilty5 (wi5) mutant, which exhibits marked dwarfing and leaf wilting throughout most of its life cycle under normal growth conditions. wilty5 seedlings exhibited lower xylem conductivity and wilted more rapidly under drought, NaCl, and high temperature treatments than wild‐type plants. Map‐based cloning revealed that WI5 encodes an active endo‐1,4‐β‐xylanase from glycosyl dehydration family 10, which mainly functions in degrading and reorganizing cell wall xylan. Reverse‐transcription polymerase chain reaction and β‐glucuronidase assays revealed that WI5 is highly expressed in stems, especially in internodes undergoing secondary wall assembly. RNA sequencing suggested that WI5 plays a unique role in internode growth. Immunohistochemistry and electron microscopy confirmed that wi5 is defective in xylan deposition and secondary cell wall thickening. Lignin deposition and xylan content were markedly reduced in wi5 compared to the wild‐type plants. Our results suggest that WI5 functions in xylem cell wall thickening through its xylanase activity and thereby regulates xylem water transport, the drought stress response, and plant growth in maize.

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    In this study, we report a endo-1,4-β-xylanase WI5 in maize, which is important for secondary cell wall thickening and water transport in elongating internodes.
      
    Protein kinases in plant responses to drought, salt, and cold stress
    Xuexue Chen, Yanglin Ding, Yongqing Yang, Chunpeng Song, Baoshan Wang, Shuhua Yang, Yan Guo and Zhizhong Gong
    J Integr Plant Biol 2021, 63 (1): 53-78.  
    doi: 10.1111/jipb.13061
    Abstract (Browse 1635)  |   Save
    Protein kinases are major players in various signal transduction pathways. Understanding the molecular mechanisms behind plant responses to biotic and abiotic stresses has become critical for developing and breeding climate‐resilient crops. In this review, we summarize recent progress on understanding plant drought, salt, and cold stress responses, with a focus on signal perception and transduction by different protein kinases, especially sucrose nonfermenting1 (SNF1)‐related protein kinases (SnRKs), mitogen‐activated protein kinase (MAPK) cascades, calcium‐dependent protein kinases (CDPKs/CPKs), and receptor‐like kinases (RLKs). We also discuss future challenges in these research fields.
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    This review summarizes the main progresses on signal perception and transduction mediated by different protein kinases in plant responses to drought, salt, and cold stress, and discusses some future challenges in these research fields.
      
    Contribution of phenylpropanoid metabolism to plant development and plant–environment interactions
    Nai-Qian Dong and Hong-Xuan Lin
    J Integr Plant Biol 2021, 63 (1): 180-209.  
    doi: 10.1111/jipb.13054
    Abstract (Browse 1410)  |   Save
    Phenylpropanoid metabolism is one of the most important metabolisms in plants, yielding more than 8,000 metabolites contributing to plant development and plant–environment interplay. Phenylpropanoid metabolism materialized during the evolution of early freshwater algae that were initiating terrestrialization and land plants have evolved multiple branches of this pathway, which give rise to metabolites including lignin, flavonoids, lignans, phenylpropanoid esters, hydroxycinnamic acid amides, and sporopollenin. Recent studies have revealed that many factors participate in the regulation of phenylpropanoid metabolism, and modulate phenylpropanoid homeostasis when plants undergo successive developmental processes and are subjected to stressful environments. In this review, we summarize recent progress on elucidating the contribution of phenylpropanoid metabolism to the coordination of plant development and plant–environment interaction, and metabolic flux redirection among diverse metabolic routes. In addition, our review focuses on the regulation of phenylpropanoid metabolism at the transcriptional, post‐transcriptional, post‐translational, and epigenetic levels, and in response to phytohormones and biotic and abiotic stresses.
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    Plant development and plant‐environment interactions are modulated by phenylpropanoid metabolism, which is regulated by transcriptional, post‐transcriptional, post‐translational, and epigenetic mechanisms, and responds to phytohormones and biotic and abiotic stresses.
      
    Ethylene and salicylic acid synergistically accelerate leaf senescence in Arabidopsis
    Chaoqi Wang, Shouyi Dai, Zhong‐Lin Zhang, Wenqing Lao, Ruiying Wang, Xianqing Meng and Xin Zhou
    J Integr Plant Biol 2021, 63 (5): 828-833.  
    doi: 10.1111/jipb.13075
    Abstract (Browse 1284)  |   Save
    The phytohormones ethylene and salicylic acid (SA) have long been known to promote senescence, but their interplay during this process remains elusive. Here we report the synergistic effects of ethylene and SA on promoting leaf senescence in Arabidopsis. EIN3, a key transcription factor of ethylene signaling, physically interacted with the core SA signaling regulator NPR1 in senescing leaves. EIN3 and NPR1 synergistically promoted the expression of the senescence‐associated genes ORE1 and SAG29. The senescence phenotype was more delayed for the ein3eil1npr1 triple mutant than ein3eil1 or npr1 with ethylene or/and SA treatment. NPR1‐promoted leaf senescence may depend on functional EIN3/EIL1.
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    Ethylene and salicylic acid synergistically promote leaf senescence in Arabidopsis. ETHYLENE INSENSITIVE3 and NONEXPRESSER OF PR GENES1 interact, promoting ORESARA1 and SENESCENCE-ASSOCIATED GENE29 expression in senescing leaves.
      
    UPA2 and ZmRAVL1: Promising targets of genetic improvement of maize plant architecture
    Dexin Kong, Baobao Wang and Haiyang Wang
    J Integr Plant Biol 2020, 62 (4): 394-397.  
    doi: 10.1111/jipb.12873
    Abstract (Browse 1273)  |   Save

    Maize (Zea mays ssp. mays) is a major staple crop, with the highest tonnage among cereal crops worldwide (FAO 2014). Over the past century, maize yields have increased over eight folds in the US central Corn Belt (from 1287 kg ha-1 in the 1930s to 11,084 kg ha-1 in 2017, http://www.fao.org, Duvick 2005b) due to a combination of genetic gain resulting from breeding efforts and improved management practices (such as application of synthetic nitrogen fertilizers, weed and pest control, increased efficiency of harvest equipment, etc.). A major management practice that contributed to the continuous yield increase is continual increases in planting density (from 30,000 plant ha-1 or less in the 1930s to 80,000 plants ha-1 or higher in the 1980s, Duvick 2005a, 2005b).

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    Tasselseed5 encodes a cytochrome C oxidase that functions in sex determination by affecting jasmonate catabolism in maize
    Fei Wang, Zhenjiang Yuan, Zhiwei Zhao, Caixia Li, Xin Zhang, Huafeng Liang, Yawen Liu, Qian Xu and Hongtao Liu
    J Integr Plant Biol 2020, 62 (2): 247-255.  
    doi: 10.1111/jipb.12826
    Abstract (Browse 1149)  |   Save
    Maize (Zea mays L.) is a monoecious grass plant in which mature male and female florets form the tassel and ear, respectively. Maize is often used as a model plant to study flower development. Several maize tassel seed mutants, such as the recessive mutants tasselseed1 (ts1) and tasselseed2 (ts2), exhibit a reversal in sex determination, which leads to the generation of seeds in tassels. The phenotype of the dominant mutant, Tasselseed5 (Ts5), is similar to that of ts2. Here, we positionally cloned the underlying gene of Ts5 and characterized its function. We show that the GRMZM2G177668 gene is overexpressed in Ts5. This gene encodes a cytochrome C oxidase, which catalyzes the transformation of jasmonoyl‐L‐isoleucine (JA‐Ile) to 12OH‐JA‐Ile during jasmonic acid catabolism. Consistent with this finding, no JA‐Ile peak was detected in Ts5 tassels during the sex determination period, unlike in the wild type. Transgenic maize plants overexpressing GRMZM2G177668 exhibited a tassel‐seed phenotype similar to that of Ts5. These results indicate that the JA‐Ile peak in tassels is critical for sex determination and that the Ts5 mutant phenotype results from the disruption of this peak in tassels during sex determination.
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    Maize is a bisexual grass plant. The ecotypic expression of GRMZM2G177668 gene, which can transform jasmonoyl‐ L‐isoleucine (JA‐Ile) to 12OH‐JA‐Ile, eliminates JA‐Ile peak in tassels during sex determinate period in Ts5 mutant and results in the feminized tassel. Furthermore, overexpression of GRMZM2G177668 in transgenic maize plants generates tassel seed phenotype similar as Ts5.
      
    Phase separation in plants: New insights into cellular compartmentalization
    Xiumei Xu, Canhui Zheng, Dandan Lu, Chun‐Peng Song and Lixin Zhang
    J Integr Plant Biol 2021, 63 (11): 1835-1855.  
    doi: 10.1111/jipb.13152
    Abstract (Browse 1147)  |   Save
    A fundamental challenge for cells is how to coordinate various biochemical reactions in space and time. To achieve spatiotemporal control, cells have developed organelles that are surrounded by lipid bilayer membranes. Further, membraneless compartmentalization, a process induced by dynamic physical association of biomolecules through phase transition offers another efficient mechanism for intracellular organization. While our understanding of phase separation was predominantly dependent on yeast and animal models, recent findings have provided compelling evidence for emerging roles of phase separation in plants. In this review, we first provide an overview of the current knowledge of phase separation, including its definition, biophysical principles, molecular features and regulatory mechanisms. Then we summarize plant-specific phase separation phenomena and describe their functions in plant biological processes in great detail. Moreover, we propose that phase separation is an evolutionarily conserved and efficient mechanism for cellular compartmentalization which allows for distinct metabolic processes and signaling pathways, and is especially beneficial for the sessile lifestyle of plants to quickly and efficiently respond to the changing environment.
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    This review provides an overview of the current knowledge of phase separation, summarizes plant-specific phase separation phenomena and describes their functions in plant biological processes. Phase separation may be especially beneficial for the sessile lifestyle of plants, allowing them to quickly and efficiently respond to the changing environment.
      
    AtSec62 is critical for plant development and is involved in ER-phagy in Arabidopsis thaliana
    Shuai Hu, Hao Ye, Yong Cui and Liwen Jiang
    J Integr Plant Biol 2020, 62 (2): 181-200.  
    doi: 10.1111/jipb.12872
    Abstract (Browse 1133)  |   Save

    The endoplasmic reticulum (ER) is the major site for protein folding in eukaryotic cells. ER homeostasis is essential for the development of an organism, whereby the unfolded protein response (UPR) within the ER is precisely regulated. ER‐phagy is a newly identified selective autophagic pathway for removal of misfolded or unfolded proteins within the ER in mammalian cells. Sec62, a component of the translocon complex, was recently characterized as an ER‐phagy receptor during the ER stress recovery phase in mammals. In this study, we demonstrated that the Arabidopsis Sec62 (AtSec62) is required for plant development and might function as an ER‐phagy receptor in plants. We showed that AtSec62 is an ER‐localized membrane protein with three transmembrane domains (TMDs) with its C‐terminus facing to the ER lumen. AtSec62 is required for plant development because atsec62 mutants display impaired vegetative growth, abnormal pollen and decreased fertility. atsec62 mutants are sensitive towards tunicamycin (TM)‐induced ER stress, whereas overexpression of AtSec62 subsequently enhances stress tolerance during the ER stress recovery phase. Moreover, YFP‐AtSec62 colocalizes with the autophagosome marker mCh‐Atg8e in ring‐like structures upon ER stress induction. Taken together, these data provide evidence for the pivotal roles of AtSec62 in plant development and ER‐phagy.

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    Endoplasmic reticulum (ER) is the major site for protein synthesizing and folding. In this study, we illustrated an ER membrane localized protein, a component of Sec translocon, is critical for keeping ER homeostasis under ER stress condition in Arabidopsis.
      
    The plant cell wall: Biosynthesis, construction, and functions
    Baocai Zhang, Yihong Gao, Lanjun Zhang and Yihua Zhou
    J Integr Plant Biol 2021, 63 (1): 251-272.  
    doi: 10.1111/jipb.13055
    Abstract (Browse 1105)  |   Save
    The plant cell wall is composed of multiple biopolymers, representing one of the most complex structural networks in nature. Hundreds of genes are involved in building such a natural masterpiece. However, the plant cell wall is the least understood cellular structure in plants. Due to great progress in plant functional genomics, many achievements have been made in uncovering cell wall biosynthesis, assembly, and architecture, as well as cell wall regulation and signaling. Such information has significantly advanced our understanding of the roles of the cell wall in many biological and physiological processes and has enhanced our utilization of cell wall materials. The use of cutting‐edge technologies such as single‐molecule imaging, nuclear magnetic resonance spectroscopy, and atomic force microscopy has provided much insight into the plant cell wall as an intricate nanoscale network, opening up unprecedented possibilities for cell wall research. In this review, we summarize the major advances made in understanding the cell wall in this era of functional genomics, including the latest findings on the biosynthesis, construction, and functions of the cell wall.
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    This review summaries the major progress in plant cell wall studies, reviewing how this complex polysaccharide network is produced and organized, and how it functions, thus providing an updated systematic understanding of this fundamental plant structure.

      
    Circadian clock in plants: Linking timing to fitness
    Xiaodong Xu, Li Yuan, Xin Yang, Xiao Zhang, Lei Wang and Qiguang Xie
    J Integr Plant Biol 2022, 64 (4): 792-811.  
    doi: 10.1111/jipb.13230
    Abstract (Browse 1101)  |   Save
    Endogenous circadian clock integrates cyclic signals of environment and daily and seasonal behaviors of organisms to achieve spatiotemporal synchronization, which greatly improves genetic diversity and fitness of species. This review addresses recent studies on the plant circadian system in the field of chronobiology, covering topics on molecular mechanisms, internal and external Zeitgebers, and hierarchical regulation of physiological outputs. The architecture of the circadian clock involves the autoregulatory transcriptional feedback loops, post-translational modifications of core oscillators, and epigenetic modifications of DNA and histones. Here, light, temperature, humidity, and internal elemental nutrients are summarized to illustrate the sensitivity of the circadian clock to timing cues. In addition, the circadian clock runs cell-autonomously, driving independent circadian rhythms in various tissues. The core oscillators responds to each other with biochemical factors including calcium ions, mineral nutrients, photosynthetic products, and hormones. We describe clock components sequentially expressed during a 24-h day that regulate rhythmic growth, aging, immune response, and resistance to biotic and abiotic stresses. Notably, more data have suggested the circadian clock links chrono-culture to key agronomic traits in crops.
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    Cited: Web of Science(15)

    This review summarizes recent research on the circadian clock, an endogenous time-keeping mechanism, covering how the circadian clock anticipates environmental and internal timing cues (Zeitgebers), the molecular architecture of core oscillators, the synchronization of cell-autonomous clocks with circadian rhythm in whole plants, and circadian outputs including agronomic traits.

      
    ESCRT-dependent vacuolar sorting and degradation of the auxin biosynthetic enzyme YUC1 flavin monooxygenase
    Chennan Ge, Caiji Gao, Qingguo Chen, Liwen Jiang and Yunde Zhao
    J Integr Plant Biol 2019, 61 (9): 968-973.  
    doi: 10.1111/jipb.12760
    Abstract (Browse 1064)  |   Save

    YUC flavin monooxygenases catalyze the rate‐limiting step of auxin biosynthesis. Here we report the vacuolar targeting and degradation of GFP‐YUC1. GFP‐YUC1 fusion expressed in Arabidopsis protoplasts or transgenic plants was primarily localized in vacuoles. Surprisingly, we established that GFP‐YUC1, a soluble protein, was sorted to vacuoles through the ESCRT pathway, which has long been recognized for sorting and targeting integral membrane proteins. We further show that GFP‐YUC1 was ubiquitinated and in this form GFP‐YUC1 was targeted for degradation, a process that was also stimulated by elevated auxin levels. Our findings revealed a molecular mechanism of GFP‐YUC1 degradation and demonstrate that the ESCRT pathway can recognize both soluble and integral membrane proteins as cargoes.

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    ESCRT complex is well known for its role in sorting and targeting membrane proteins for degradation. This study shows that the key auxin biosynthesis enzyme YUC1, a soluble and cytosolic protein, also adopts the ESCRT‐dependent vacuole sorting and degradation pathway.
      
    DEK43 is a P-type pentatricopeptide repeat (PPR) protein responsible for the Cis-splicing of nad4 in maize mitochondria
    Ru Chang Ren, Li Li Wang, Lin Zhang, Ya Jie Zhao, Jia Wen Wu, Yi Ming Wei, Xian Sheng Zhang and Xiang Yu Zhao
    J Integr Plant Biol 2020, 62 (3): 299-313.  
    doi: 10.1111/jipb.12843
    Abstract (Browse 1052)  |   Save

    Mitochondria, the main energy transducers in plant cells, require the proper assembly of respiratory chain complexes I–V for their function. The NADH dehydrogenase 4 (nad4) gene encodes mitochondrial respiratory chain complex I subunit IV, but the mechanism underlying nad4 transcript splicing is unclear. Here, we report that the P‐type pentatricopeptide repeat (PPR) protein DEFECTIVE KERNEL 43 (DEK43) is responsible for cis‐splicing of the nad4 transcript in maize. We demonstrate that DEK43 localizes to both the nucleus and mitochondria. The mutation of Dek43 resulted in embryo‐lethal and light‐colored defective kernels. Among the 22 mitochondrial group II introns, the splicing efficiency of nad4 introns 1 and 3 was reduced by up to 50% compared to the wild type. The levels of complex I and supercomplex I+III2 were also reduced in dek43. Furthermore, in‐gel NADH dehydrogenase assays indicated that the activities of these complexes were significantly reduced in dek43. Further, the mitochondrial ultrastructure was altered in the mutant. Together, our findings indicate that DEK43, a dual‐localized PPR protein, plays an important role in maintaining mitochondrial function and maize kernel development.

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    DEK43 encodes a P-type PPR (pentatricopeptide repeat) protein that locates in both nucleus and mitochondria in maize. DEK43 is involved in the post-transcriptional processing of mitochondrial nad4, and plays an important role in maintaining the normal function of mitochondrial respiratory pathway and maize kernel development.
      
    The Phytophthora effector Avh241 interacts with host NDR1-like proteins to manipulate plant immunity
    Bo Yang, Sen Yang, Baodian Guo, Yuyin Wang, Wenyue Zheng, Mengjun Tian, Kaixin Dai, Zehan Liu, Haonan Wang, Zhenchuan Ma, Yan Wang, Wenwu Ye, Suomeng Dong and Yuanchao Wang
    J Integr Plant Biol 2021, 63 (7): 1382-1396.  
    DOI: 10.1111/jipb.13082
    Abstract (Browse 1040)  |   Save
    Plant pathogens rely on effector proteins to suppress host innate immune responses and facilitate colonization. Although the Phytophthora sojae RxLR effector Avh241 promotes Phytophthora infection, the molecular basis of Avh241 virulence remains poorly understood. Here we identified non-race specific disease resistance 1 (NDR1)-like proteins, the critical components in plant effector-triggered immunity (ETI) responses, as host targets of Avh241. Avh241 interacts with NDR1 in the plasma membrane and suppresses NDR1-participated ETI responses. Silencing of GmNDR1s increases the susceptibility of soybean to P. sojae infection, and overexpression of GmNDR1s reduces infection, which supports its positive role in plant immunity against P. sojae. Furthermore, we demonstrate that GmNDR1 interacts with itself, and Avh241 probably disrupts the self-association of GmNDR1. These data highlight an effective counter-defense mechanism by which a Phytophthora effector suppresses plant immune responses, likely by disturbing the function of NDR1 during infection.
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    The RxLR effector Avh241 from Phytophthora sojae targets soybean Nonrace specific disease resistance 1 (GmNDR1) protein in the plasma membrane to contribute to pathogen virulence. GmNDR1 interacts with itself, and Avh241 probably disrupts GmNDR1 self-association, thus suppressing NDR1-dependent plant immunity.
      
    Root developmental responses to phosphorus nutrition
    Dong Liu
    J Integr Plant Biol 2021, 63 (6): 1065-1090.  
    doi: 10.1111/jipb.13090
    Abstract (Browse 1040)  |   Save
    Phosphorus is an essential macronutrient for plant growth and development. Root system architecture (RSA) affects a plant's ability to obtain phosphate, the major form of phosphorus that plants uptake. In this review, I first consider the relationship between RSA and plant phosphorus-acquisition efficiency, describe how external phosphorus conditions both induce and impose changes in the RSA of major crops and of the model plant Arabidopsis, and discuss whether shoot phosphorus status affects RSA and whether there is a universal root developmental response across all plant species. I then summarize the current understanding of the molecular mechanisms governing root developmental responses to phosphorus deficiency. I also explore the possible reasons for the inconsistent results reported by different research groups and comment on the relevance of some studies performed under laboratory conditions to what occurs in natural environments.
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    This review presents the root developmental responses of major crops and Arabidopsis to phosphorus nutrition, discuss the factors that affect these responses, and summarizes our current understandings of the molecular mechanisms underlying these responses.
      
    CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice
    Xinyong Liu, Xichun Zhang, Ruijie Cao, Guiai Jiao, Shikai Hu, Gaoneng Shao, Zhonghua Sheng, Lihong Xie, Shaoqing Tang, Xiangjin Wei and Peisong Hu
    J Integr Plant Biol 2021, 63 (10): 1724-1739.  
    doi: 10.1111/jipb.13147
    Abstract (Browse 1011)  |   Save
    Pentatricopeptide repeat (PPR) proteins play important roles in the post-transcriptional modification of organellar RNAs in plants. However, the function of most PPR proteins remains unknown. Here, we characterized the rice (Oryza sativa L.) chlorophyll deficient 4 (cde4) mutant which exhibits an albino phenotype during early leaf development, with decreased chlorophyll contents and abnormal chloroplasts at low-temperature (20°C). Positional cloning revealed that CDE4 encodes a P-type PPR protein localized in chloroplasts. In the cde4 mutant, plastid-encoded polymerase (PEP)-dependent transcript levels were significantly reduced, but transcript levels of nuclear-encoded genes were increased compared to wild-type plants at 20°C. CDE4 directly binds to the transcripts of the chloroplast genes rpl2, ndhA, and ndhB. Intron splicing of these transcripts was defective in the cde4 mutant at 20°C, but was normal at 32°C. Moreover, CDE4 interacts with the guanylate kinase VIRESCENT 2 (V2); overexpression of V2 enhanced CDE4 protein stability, thereby rescuing the cde4 phenotype at 20°C. Our results suggest that CDE4 participates in plastid RNA splicing and plays an important role in rice chloroplast development under low-temperature conditions.
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    The pentatricopeptide repeat protein CDE4 localizes in chloroplasts, where it is stabilized by VIRESCENT 2 and plays important roles in chloroplast RNA splicing, maintenance of chloroplast transcription/translation, and regulation of chloroplast development in rice under low-temperature conditions.
      
    Loss of Gn1a/OsCKX2 confers heavy-panicle rice with excellent lodging resistance
    Bin Tu, Zhang Tao, Shiguang Wang, Lei Zhou, Ling Zheng, Chun Zhang, Xinzi Li, Xiaoyu Zhang, Junjie Yin, Xiaobo Zhu, Hua Yuan, Ting Li, Weilan Chen, Peng Qin, Bingtian Ma, Yuping Wang and Shigui Li
    J Integr Plant Biol 2022, 64 (1): 23-38.  
    doi: 10.1111/jipb.13185
    Abstract (Browse 1002)  |   Save
    Significant achievements have been made in breeding programs for the heavy-panicle-type (HPT) rice (Oryza sativa) in Southwest China. The HPT varieties now exhibit excellent lodging resistance, allowing them to overcome the greater pressures caused by heavy panicles. However, the genetic mechanism of this lodging resistance remains elusive. Here, we isolated a major quantitative trait locus, Panicle Neck Diameter 1 (PND1), and identified the causal gene as GRAIN NUMBER 1A/CYTOKININ OXIDASE 2 (Gn1A/OsCKX2). The null gn1a allele from rice line R498 (gn1aR498) improved lodging resistance through increasing the culm diameter and promoting crown root development. Loss-of-function of Gn1a/OsCKX2 led to cytokinin accumulation in the crown root tip and accelerated the development of adventitious roots. Gene pyramiding between the null gn1aR498 allele with two gain-of-function alleles, STRONG CULM 2 (SCM2) and SCM3, further improved lodging resistance. Moreover, Gn1a/OsCKX2 had minimal influence on overall rice quality. Our research thus highlights the distinct genetic components of lodging resistance of HPT varieties and provides a strategy for tailor-made crop improvement of both yield and lodging resistance in rice.
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    Cited: Web of Science(22)
    Loss of Gn1a/OsCKX2 confers heavy-panicle rice with excellent lodging resistance by increasing culm and crown root development. Moreover, Gn1a/OsCKX2 had minimal influence on overall rice quality. This research provides a strategy for tailor-made improvement of yield and lodging resistance in rice.
      
    AGAMOUS AND TERMINAL FLOWER controls floral organ identity and inflorescence development in Medicago truncatula
    Butuo Zhu, Hui Li, Yifeng Hou, Pengcheng Zhang, Xiuzhi Xia, Na Wang, Hui Wang, Kirankumar S. Mysore, Jiangqi Wen, Yanxi Pei, Lifang Niu and Hao Lin
    J Integr Plant Biol 2019, 61 (8): 917-923.  
    doi: 10.1111/jipb.12799
    Abstract (Browse 998)  |   Save

    Angiosperms integrate a multitude of endogenous and environmental signals to control floral development, thereby ensuring reproductive success. Here, we report the identification of AGAMOUS AND TERMINAL FLOWER (AGTFL), a novel regulator of floral development in Medicago truncatula. Mutation of AGTFL led to the transformation of carpels and stamens into numerous sepals and petals and altered primary inflorescence identity. AGTFL encodes a nucleus‐localized protein containing a putative Myb/SANT‐like DNA‐binding domain and a PKc kinase domain. Molecular and genetic analyses revealed that AGTFL regulates the transcription of MtAGs and MtTFL1 to control floral organ identity and inflorescence development.

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    Flower is the most important biological structure for ensuring plant reproductive success. Our studies report the identifi cation of AGAMOUS AND TERMINAL FLOWER (AGTFL), a novel coordinator of floral development, that regulates the transcription of MtAGs and MtTFL1 to control floral organ identity and inflorescence development in Medicago truncatula.
      
    Targeting and signaling of Rho of plants guanosine triphosphatases require synergistic interaction between guanine nucleotide inhibitor and vesicular trafficking
    Fu-Rong Ge, Sen Chai, Sha Li and Yan Zhang
    J Integr Plant Biol 2020, 62 (10): 1484-1499.  
    DOI: 10.1111/jipb.12928
    Abstract (Browse 992)  |   Save

    Most eukaryotic cells are polarized. Common toolbox regulating cell polarization includes Rho guanosine triphosphatases (GTPases), in which spatiotemporal activation is regulated by a plethora of regulators. Rho of plants (ROPs) are the only Rho GTPases in plants. Although vesicular trafficking was hinted in the regulation of ROPs, it was unclear where vesicle‐carried ROP starts, whether it is dynamically regulated, and which components participate in vesicle‐mediated ROP targeting. In addition, although vesicle trafficking and guanine nucleotide inhibitor (GDI) pathways in Rho signaling have been extensively studied in yeast, it is unknown whether the two pathways interplay. Unclear are also cellular and developmental consequences of their interaction in multicellular organisms. Here, we show that the dynamic targeting of ROP through vesicles requires coat protein complex II and ADP‐ribosylation factor 1‐mediated post‐Golgi trafficking. Trafficking of vesicle‐carried ROPs between the plasma membrane and the trans‐Golgi network is mediated through adaptor protein 1 and sterol‐mediated endocytosis. Finally, we show that GDI and vesicle trafficking synergistically regulate cell polarization and ROP targeting, suggesting that the establishment and maintenance of cell polarity is regulated by an evolutionarily conserved mechanism.

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    Targeting of ROP is vital for its function in plant development and environmental responses, however, the controlling mechanisms aren’t fully understood. This study reported that ROP targeting and polar cell growth its regulates are synergistically controlled by RhoGDIs and a vesicle trafficking route involving COPII, ARF1, adaptor protein-1, and sterol-mediated endocytosis.
      
    Abscisic acid signaling negatively regulates nitrate uptake via phosphorylation of NRT1.1 by SnRK2s in Arabidopsis
    Hang Su, Tian Wang, Chuanfeng Ju, Jinping Deng, Tianqi Zhang, Mengjiao Li, Hui Tian and Cun Wang
    J Integr Plant Biol 2021, 63 (3): 597-610.  
    doi: 10.1111/jipb.13057
    Abstract (Browse 968)  |   Save
    Nitrogen (N) is a limiting nutrient for plant growth and productivity. The phytohormone abscisic acid (ABA) has been suggested to play a vital role in nitrate uptake in fluctuating N environments. However, the molecular mechanisms underlying the involvement of ABA in N deficiency responses are largely unknown. In this study, we demonstrated that ABA signaling components, particularly the three subclass III SUCROSE NON‐FERMENTING1 (SNF1)‐RELATED PROTEIN KINASE 2S (SnRK2) proteins, function in root foraging and uptake of nitrate under N deficiency in Arabidopsis thaliana. The snrk2.2snrk2.3snrk2.6 triple mutant grew a longer primary root and had a higher rate of nitrate influx and accumulation compared with wild‐type plants under nitrate deficiency. Strikingly, SnRK2.2/2.3/2.6 proteins interacted with and phosphorylated the nitrate transceptor NITRATE TRANSPORTER1.1 (NRT1.1) in vitro and in vivo. The phosphorylation of NRT1.1 by SnRK2s resulted in a significant decrease of nitrate uptake and impairment of root growth. Moreover, we identified NRT1.1Ser585 as a previously unknown functional site: the phosphomimetic NRT1.1S585D was impaired in both low‐ and high‐affinity transport activities. Taken together, our findings provide new insight into how plants fine‐tune growth via ABA signaling under N deficiency.
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    The core kinases in abscisic acid signaling, SnRK2s, phosphorylate the nitrate transceptor NRT1.1, resulting in a significant decrease of nitrate uptake and impairment of root growth, allowing plants to fine-tune growth  under nitrate deficiency.
      
    GDSL esterase/lipases OsGELP34 and OsGELP110/OsGELP115 are essential for rice pollen development
    Huihui Zhang, Menglong Wang, Yiqi Li, Wei Yan, Zhenyi Chang, Haolin Ni, Zhufeng Chen, Jianxin Wu, Chunjue Xu, Xing Wang Deng and Xiaoyan Tang
    J Integr Plant Biol 2020, 62 (10): 1574-1593.  
    doi: 10.1111/jipb.12919
    Abstract (Browse 964)  |   Save

    Pollen exine contains complex biopolymers of aliphatic lipids and phenolics. Abnormal development of pollen exine often leads to plant sterility. Molecular mechanisms regulating exine formation have been studied extensively but remain ambiguous. Here we report the analyses of three GDSL esterase/lipase protein genes, OsGELP34, OsGELP110, and OsGELP115, for rice exine formation. OsGELP34 was identified by cloning of a male sterile mutant gene. OsGELP34 encodes an endoplasmic reticulum protein and was mainly expressed in anthers during pollen exine formation. osgelp34 mutant displayed abnormal exine and altered expression of a number of key genes required for pollen development. OsGELP110 was previously identified as a gene differentially expressed in meiotic anthers. OsGELP110 was most homologous to OsGELP115, and the two genes showed similar gene expression patterns. Both OsGELP110 and OsGELP115 proteins were localized in peroxisomes. Individual knockout of OsGELP110 and OsGELP115 did not affect the plant fertility, but double knockout of both genes altered the exine structure and rendered the plant male sterile. OsGELP34 is distant from OsGELP110 and OsGELP115 in sequence, and osgelp34 and osgelp110/osgelp115 mutants were different in anther morphology despite both were male sterile. These results suggested that OsGELP34 and OsGELP110/OsGELP115 catalyze different compounds for pollen exine development.

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    Abnormal development of pollen exine often leads to plant sterility. Here we report the identification of three GDSL esterase/lipase protein genes, OsGELP34 and the redundant OsGELP110 and OsGELP115 genes, which are required for rice pollen fertility. OsGELP34 and OsGELP110/OsGELP115 regulate exine formation through different mechanisms.

      
    Salicylic acid and ethylene coordinately promote leaf senescence
    Xiaodong Yu, Yiren Xu and Shunping Yan
    J Integr Plant Biol 2021, 63 (5): 823-827.  
    doi: 10.1111/jipb.13074
    Abstract (Browse 962)  |   Save
    Leaf senescence is an intrinsic biological process of plants. The phytohormones salicylic acid (SA) and ethylene (ET) are known to promote senescence. However, their relationship in this process is still unclear. We found that EIN3 and EIL1, two key transcription factors in ET signaling, are required for SA‐induced leaf senescence in Arabidopsis. Furthermore, ET enhances the effect of SA in promoting senescence. Biochemical studies revealed that NPR1, the master regulator of SA signaling, interacts with EIN3 to promote its transcriptional activity. Our study suggests that SA and ET function coordinately in senescence, which is in contrast to their antagonistic crosstalk in other biological processes.
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    In contrast to their antagonistic functions in other processes, the phytohormones salicylic acid (SA) and ethylene function coordinately in promoting leaf senescence in Arabidopsis. NONEXPRESSOR OF PATHOGENESIS-RELATED GENES 1, the master regulator of SA signaling, interacts with ETHYLENE INSENSITIVE3, the key ethylene signaling transcription factor, to promote its transcriptional activity.
      
    The E3 ligase XBAT35 mediates thermoresponsive hypocotyl growth by targeting ELF3 for degradation in Arabidopsis
    Lin‐Lin Zhang, Wei Li, Ying‐Ying Tian, Seth Jon Davis and Jian‐Xiang Liu
    J Integr Plant Biol 2021, 63 (6): 1097-1103.  
    doi: 10.1111/jipb.13107
    Abstract (Browse 901)  |   Save
    Plants are capable of coordination of their growth and development with ambient temperatures. EARLY FLOWERING3 (ELF3), an essential component of the plant circadian clock, is also involved in ambient temperature sensing, as well as in inhibiting the expression and protein activity of the thermoresponsive regulator phytochrome interacting factor 4 (PIF4). The ELF3 activity is subjected to attenuation in response to warm temperature; however, how the protein level of ELF3 is regulated at warm temperature remains less understood. Here, we report that the E3 ligase XB3 ORTHOLOG 5 IN ARABIDOPSIS THALIANA, XBAT35, mediates ELF3 degradation. XBAT35 interacts with ELF3 and ubiquitinates ELF3. Loss-of-function mutation of XBAT35 increases the protein level of ELF3 and confers a short-hypocotyl phenotype under warm temperature conditions. Thus, our findings establish that XBAT35 mediates ELF3 degradation to lift the inhibition of ELF3 on PIF4 for promoting thermoresponsive hypocotyl growth in plants.
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    ELF3, an essential component of circadian clock, is also involved in inhibiting the key thermoregulator PIF4. The Arabidopsis E3 ligase, XBAT35, ubiquitinates and degrades ELF3 under warm temperature conditions to lift the inhibitory effects of ELF3 on PIF4, therefore, promoting thermoresponsive hypocotyl growth in plants.
      
    ESCRT-III component OsSNF7.2 modulates leaf rolling by trafficking and endosomal degradation of auxin biosynthetic enzyme OsYUC8 in rice
    Liang Zhou, Saihua Chen, Maohong Cai, Song Cui, Yulong Ren, Xinyue Zhang, Tianzhen Liu, Chunlei Zhou, Xin Jin, Limin Zhang, Minxi Wu, Shuyi Zhang, Zhijun Cheng, Xin Zhang, Cailin Lei, Qibing Lin, Xiuping Guo, Jie Wang, Zhichao Zhao, Ling Jiang, Shanshan Zhu and Jianmin Wan
    J Integr Plant Biol 2023, 65 (6): 1408-1422.  
    DOI: 10.1111/jipb.13460
    Abstract (Browse 898)  |   Save
    The endosomal sorting complex required for transport (ESCRT) is highly conserved in eukaryotic cells and plays an essential role in the biogenesis of multivesicular bodies and cargo degradation to the plant vacuole or lysosomes. Although ESCRT components affect a variety of plant growth and development processes, their impact on leaf development is rarely reported. Here, we found that OsSNF7.2, an ESCRT-III component, controls leaf rolling in rice (Oryza sativa). The Ossnf7.2 mutant rolled leaf 17 (rl17) has adaxially rolled leaves due to the decreased number and size of the bulliform cells. OsSNF7.2 is expressed ubiquitously in all tissues, and its protein is localized in the endosomal compartments. OsSNF7.2 homologs, including OsSNF7, OsSNF7.3, and OsSNF7.4, can physically interact with OsSNF7.2, but their single mutation did not result in leaf rolling. Other ESCRT complex subunits, namely OsVPS20, OsVPS24, and OsBRO1, also interact with OsSNF7.2. Further assays revealed that OsSNF7.2 interacts with OsYUC8 and aids its vacuolar degradation. Both Osyuc8 and rl17 Osyuc8 showed rolled leaves, indicating that OsYUC8 and OsSNF7.2 function in the same pathway, conferring leaf development. This study reveals a new biological function for the ESCRT-III components, and provides new insights into the molecular mechanisms underlying leaf rolling.
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    Cited: Web of Science(4)
    The ESCRT-III component OsSNF7.2 modulates leaf rolling by trafficking and endosomal degradation of the auxin biosynthetic enzyme OsYUCCA8 in rice.
      
    From genes to networks: The genetic control of leaf development
    Hongfeng Wang, Fanjiang Kong and Chuanen Zhou
    J Integr Plant Biol 2021, 63 (7): 1181-1196.  
    doi: 10.1111/jipb.13084
    Abstract (Browse 892)  |   Save
    Substantial diversity exists for both the size and shape of the leaf, the main photosynthetic organ of flowering plants. The two major forms of leaf are simple leaves, in which the leaf blade is undivided, and compound leaves, which comprise several leaflets. Leaves form at the shoot apical meristem from a group of undifferentiated cells, which first establish polarity, then grow and differentiate. Each of these processes is controlled by a combination of transcriptional regulators, microRNAs and phytohormones. The present review documents recent advances in our understanding of how these various factors modulate the development of both simple leaves (focusing mainly on the model plant Arabidopsis thaliana) and compound leaves (focusing mainly on the model legume species Medicago truncatula).
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    Leaves are the main photosynthetic organs in plants and leaf morphology varies greatly among species. This review summarizes genetic mechanisms that control leaf development, with an emphasis on the regulatory modules characterized in the simple- and compound-leafed species
      
    Functional assembly of root-associated microbial consortia improves nutrient efficiency and yield in soybean
    Cunhu Wang, Yanjun Li, Mingjia Li, Kefei Zhang, Wenjing Ma, Lei Zheng, Hanyu Xu, Baofeng Cui, Ran Liu, Yongqing Yang, Yongjia Zhong and Hong Liao
    J Integr Plant Biol 2021, 63 (6): 1021-1035.  
    doi: 10.1111/jipb.13073
    Abstract (Browse 889)  |   Save
    Root-associated microbes are critical for plant growth and nutrient acquisition. However, scant information exists on optimizing communities of beneficial root-associated microbes or the mechanisms underlying their interactions with host plants. In this report, we demonstrate that root-associated microbes are critical influencers of host plant growth and nutrient acquisition. Three synthetic communities (SynComs) were constructed based on functional screening of 1,893 microbial strains isolated from root-associated compartments of soybean plants. Functional assemblage of SynComs promoted significant plant growth and nutrient acquisition under both N/P nutrient deficiency and sufficiency conditions. Field trials further revealed that application of SynComs stably and significantly promoted plant growth, facilitated N and P acquisition, and subsequently increased soybean yield. Among the tested communities, SynCom1 exhibited the greatest promotion effect, with yield increases of up to 36.1% observed in two field sites. Further RNA-seq implied that SynCom application systemically regulates N and P signaling networks at the transcriptional level, which leads to increased representation of important growth pathways, especially those related to auxin responses. Overall, this study details a promising strategy for constructing SynComs based on functional screening, which are capable of enhancing nutrient acquisition and crop yield through the activities of beneficial root-associated microbes.
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    Root-associated microbes are critical for plant growth and nutrient acquisition. To improve nitrogen and phosphate acquisition, and finally increase the yield of soybean, this pipeline uses root-associated microbes through SynCom construction based on the functions of beneficial microbes.
      
    Plasma membrane H+‐ATPases‐mediated cytosolic proton gradient regulates pollen tube growth
    Wei Chen, Peng‐Fei Jia, Wei‐Cai Yang and Hong‐Ju Li
    J Integr Plant Biol 2020, 62 (12): 1817-1822.  
    doi: 10.1111/jipb.12981
    Abstract (Browse 888)  |   Save

    The polar growth of pollen tubes is essential for the delivery of sperm cells during fertilization in angiosperms. How this polar growth is regulated has been a long‐standing question. An in vitro pharmacological assay previously implicated proton flux in pollen tube growth, although genetic and cellular supporting evidence was lacking. Here, we report that protons form a gradient from the pollen tube tip to the shank region and this gradient is generated by three members of Arabidopsis H+‐ATPases (AHAs). Genetic analysis suggested that these AHAs are essential for pollen tube growth, thus providing new insight into the regulation of polar growth.

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    Proton movement across cell membranes is critical for many developmental and physiological processes in all organisms. Here we report that plasma membrane H+-ATPases (AHAs) form a proton gradient in Arabidopsis thaliana pollen tubes that is essential for pollen tube growth.
      
    An update on the function and regulation of methylerythritol phosphate and mevalonate pathways and their evolutionary dynamics
    Xiaojun Pu, Xiumei Dong, Qing Li, Zexi Chen and Li Liu
    J Integr Plant Biol 2021, 63 (7): 1211-1226.  
    DOI: 10.1111/jipb.13076
    Abstract (Browse 883)  |   Save
    Isoprenoids are among the largest and most chemically diverse classes of organic compounds in nature and are involved in the processes of photosynthesis, respiration, growth, development, and plant responses to stress. The basic building block units for isoprenoid synthesis—isopentenyl diphosphate and its isomer dimethylallyl diphosphate—are generated by the mevalonate (MVA) and methylerythritol phosphate (MEP) pathways. Here, we summarize recent advances on the roles of the MEP and MVA pathways in plant growth, development and stress responses, and attempt to define the underlying gene networks that orchestrate the MEP and MVA pathways in response to developmental or environmental cues. Through phylogenomic analysis, we also provide a new perspective on the evolution of the plant isoprenoid pathway. We conclude that the presence of the MVA pathway in plants may be associated with the transition from aquatic to subaerial and terrestrial environments, as lineages for its core components are absent in green algae. The emergence of the MVA pathway has acted as a key evolutionary event in plants that facilitated land colonization and subsequent embryo development, as well as adaptation to new and varied environments.
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    In this review, we summarize recent advances in understanding the roles of the methylerythritol phosphate and mevalonate isoprenoid biosynthesis pathways in plant growth, development, and stress responses, with an emphasis on emergence of the mevalonate pathway in plants and how it may have facilitated plant adaptation to terrestrial environments.
      
    Auxin signaling: Research advances over the past 30 years
    Zipeng Yu, Feng Zhang, Jiří Friml and Zhaojun Ding
    J Integr Plant Biol 2022, 64 (2): 371-392.  
    doi: 10.1111/jipb.13225
    Abstract (Browse 881)  |   Save
    Auxin, one of the first identified and most widely studied phytohormones, has been and will remain a hot topic in plant biology. After more than a century of passionate exploration, the mysteries of its synthesis, transport, signaling, and metabolism have largely been unlocked. Due to the rapid development of new technologies, new methods, and new genetic materials, the study of auxin has entered the fast lane over the past 30 years. Here, we highlight advances in understanding auxin signaling, including auxin perception, rapid auxin responses, TRANSPORT INHIBITOR RESPONSE 1 and AUXIN SIGNALING F-boxes (TIR1/AFBs)-mediated transcriptional and non-transcriptional branches, and the epigenetic regulation of auxin signaling. We also focus on feedback inhibition mechanisms that prevent the over-amplification of auxin signals. In addition, we cover the TRANSMEMBRANE KINASE-mediated non-canonical signaling, which converges with TIR1/AFBs-mediated transcriptional regulation to coordinate plant growth and development. The identification of additional auxin signaling components and their regulation will continue to open new avenues of research in this field, leading to an increasingly deeper, more comprehensive understanding of how auxin signals are interpreted at the cellular level to regulate plant growth and development.
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    Cited: Web of Science(58)
    This review systematically summarizes recent advances in the field of auxin signaling over the past 30 years, including auxin perception, canonical and non-canonical signaling, signaling brake, acid growth hypothesis, epigenetic regulatory modifications, and the rapidly developing “rapid auxin response”.
      
    The 35S promoter-driven mDII auxin control sensor is uniformly distributed in leaf primordia
    Chunmei Guan, Fei Du, Yuanyuan Xiong and Yuling Jiao
    J Integr Plant Biol 2019, 61 (11): 1114-1120.  
    doi: 10.1111/jipb.12853
    Abstract (Browse 878)  |   Save

    The DII auxin sensor has been an invaluable tool for mapping the spatiotemporal auxin response and distribution in the model plant Arabidopsis thaliana. The DII sensor and the mDII control sensor are driven by the widely used constitutive 35S promoter. Recently, however, the reliability of the DII sensor has been questioned (Bhatia et al. 2019). They argued that the 35S promoter activity is biased toward leaf primordium adaxial side that face the shoot apical meristem (SAM). Here, we provide additional evidence to show that the mDII control sensor is indeed uniformly distributed in early leaf primordia, in agreement with the original reports (Vernoux et al. 2011; Brunoud et al. 2012). We used the DII/mDII and RPS5A promoter‐driven R2D2 sensors to confirm the presence of asymmetric auxin signaling in early leaf primordia. In addition to these analyses, we show that the imaging data reported by Bhatia et al. (2019) may suffer from artefacts, and that their analysis was artificially biased due to an arbitrary domain demarcation.

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    By using mechanical and optical sectioning of DII/mDII and R2D2 auxin sensors, we reconfirmed the presence of asymmetric auxin signaling in leaf primordia. We also showed that the imaging data reported by Bhatia et al. (2019) may suffer from artefacts, and that their analysis was artificially biased due to an arbitrary domain demarcation.
      
    Transcription factor GLK1 promotes anthocyanin biosynthesis via an MBW complex-dependent pathway in Arabidopsis thaliana
    Yan Li, Wei Lei, Zuxu Zhou, Yanlin Li, Dawei Zhang and Honghui Lin
    J Integr Plant Biol 2023, 65 (6): 1521-1535.  
    DOI: 10.1111/jipb.13471
    Abstract (Browse 873)  |   Save
    Anthocyanins are important natural plant pigments and play diverse roles in plant growth and adaptation. Anthocyanins function as screens to protect photosynthetic tissues from photoinhibition. However, the regulatory mechanisms underlying the biosynthesis and spatial accumulation pattern of anthocyanins remain some unresolved issues. Here, we demonstrate that the GARP-type transcription factor GOLDEN2-LIKE 1 (GLK1) functions as a positive factor in anthocyanin accumulation. GLK1 enhances the transcriptional activation activities of MYB75, MYB90, and MYB113 via direct protein- protein interactions to increase the expression of anthocyanin-specific biosynthetic genes. Anthocyanins accumulate in an acropetal manner in Arabidopsis. We also found that the expression pattern of GLK1 overall mimicked the accumulation pattern of anthocyanin from the base of the main stem to the shoot apex. Based on these findings, we established a working model for the role of GLK1 in anthocyanin accumulation and propose that GLK1 mediates the spatial distribution pattern of anthocyanins by affecting the transcriptional activation activities of MYB75, MYB90, and MYB113.
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    Cited: Web of Science(2)
    Anthocyanins are important natural plant pigments that play diverse roles in plant growth, such as affecting pollination and seed distribution, and protecting against UV light. The GARP-type transcription factor GLK1 positively regulates anthocyanin accumulation.
      
    Lectin receptor kinase OsLecRK-S.7 is required for pollen development and male fertility
    Xiaoqun Peng, Menglong Wang, Yiqi Li, Wei Yan, Zhenyi Chang, Zhufeng Chen, Chunjue Xu, Chengwei Yang, Xing Wang Deng, Jianxin Wu, and Xiaoyan Tang
    J Integr Plant Biol 2020, 62 (8): 1227-1245.  
    doi: 10.1111/jipb.12897
    Abstract (Browse 872)  |   Save

    Pollen grains are covered by exine that protects the pollen from stress and facilitates pollination. Here we isolated a male sterile mutant s13283 in rice exhibiting aborted pollen with abnormal exine and defective aperture. The mutant gene encodes a novel plasma membrane‐localized legume‐lectin receptor kinase that we named OsLecRK‐S.7. OsLecRK‐S.7 was expressed at different levels in all tested tissues and throughout anther development. In vitro kinase assay showed OsLecRK‐S.7 capable of autophosporylation. Mutation in s13283 (E560K) and mutation of the conserved ATP binding site (K418E) both knocked out the kinase activity. Mass spectrometry showed Thr376, Ser378, Thr386, Thr403, and Thr657 to be the autophosphorylation sites. Mutation of individual autophosphorylation site affected the in vitro kinase activity to different degrees, but did not abolish the gene function in fertility complementation. oslecrk‐s.7 mutant plant overexpressing OsLecRK‐S.7 recovered male fertility but showed severe growth retardation with reduced number of tillers, and these phenotypes were abolished by E560K or K418E mutation. The results indicated that OsLecRK‐S.7 was a key regulator of pollen development.

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    By isolating a recessive mutant gene responsible for a complete male sterile phenotype, we identified the first legume-lectin receptor kinase in rice, OsLecRK-S.7, with a function in regulating pollen exine assembly and aperture development. OsLecRK-S.7 required the kinase activity for its gene function.

      
    MiR319-targeted OsTCP21 and OsGAmyb regulate tillering and grain yield in rice
    Rongna Wang, Xiuyan Yang, Shuang Guo, Zhaohui Wang, Zhanhui Zhang and Zhongming Fang
    J Integr Plant Biol 2021, 63 (7): 1260-1272.  
    DOI: 10.1111/jipb.13097
    Abstract (Browse 872)  |   Save
    Multiple genes and microRNAs (miRNAs) improve grain yield by promoting tillering. MiR319s are known to regulate several aspects of plant development; however, whether miR319s are essential for tillering regulation remains unclear. Here, we report that miR319 is highly expressed in the basal part of rice plant at different development stages. The miR319 knockdown line Short Tandem Target Mimic 319 (STTM319) showed higher tiller bud length in seedlings under low nitrogen (N) condition and higher tiller bud number under high N condition compared with the miR319a-overexpression line. Through targets prediction, we identified OsTCP21 and OsGAmyb as downstream targets of miR319. Moreover, OsTCP21 and OsGAmyb overexpression lines and STTM319 had increased tiller bud length and biomass, whereas both were decreased in OsTCP21 and OsGAmyb knockout lines and OE319a. These data suggest that miR319 regulates rice tiller bud development and tillering through targeting OsTCP21 and OsGAmyb. Notably, the tiller number and grain yield increased in STTM319 and overexpression lines of OsTCP21 and OsGAmyb but decreased in OE319a and knockout lines of OsTCP21 and OsGAmyb. Taken together, our findings indicate that miR319s negatively affect tiller number and grain yield by targeting OsTCP21 and OsGAmyb, revealing a novel function for miR319 in rice.
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    The microRNA miR319s play negative roles in regulating bud outgrowth and tiller number in rice by targeting the transcription factor genes OsTCP21 and OsGAMYB.
      
    OpNAC1 transcription factor regulates the biosynthesis of the anticancer drug camptothecin by targeting loganic acid O-methyltransferase in Ophiorrhiza pumila
    Xiaolong Hao, Can Wang, Wei Zhou, Qingyan Ruan, Chenhong Xie, Yinkai Yang, Chengyu Xiao, Yan Cai, Jingyi Wang, Yao Wang, Xuebin Zhang, Itay Maoz, Guoyin Kai
    J Integr Plant Biol 2023, 65 (1): 133-149.  
    DOI: 10.1111/jipb.13377
    Abstract (Browse 866)  |   Save
    Camptothecin (CPT) is an anticancer pentacyclic quinoline alkaloid widely used to treat cancer patients worldwide. However, the biosynthetic pathway and transcriptional regulation of camptothecin are largely unknown. Ophiorrhiza pumila, the herbaceous plant from the Rubiaceae family, has emerged as a model plant for studying camptothecin biosynthesis and regulation. In this study, a high-quality reference genome of O. pumila with estimated size of ~456.90?Mb was reported, and the accumulation level of camptothecin in roots was higher than that in stems and leaves. Based on its spatial distribution in the plant, we examined gene functions and expression by combining genomics with transcriptomic analysis. Two loganic acid O-methyltransferase (OpLAMTs) were identified in strictosidine-producing plant O. pumila, and enzyme catalysis assays showed that OpLAMT1 and not OpLAMT2 could convert loganic acid into loganin. Further knock-out of OpLAMT1 expression led to the elimination of loganin and camptothecin accumulation in O. pumila hairy roots. Four key residues were identified in OpLAMT1 protein crucial for the catalytic activity of loganic acid to loganin. By co-expression network, we identified a NAC transcription factor, OpNAC1, as a candidate gene for regulating camptothecin biosynthesis. Transgenic hairy roots and biochemical assays demonstrated that OpNAC1 suppressed OpLAMT1 expression. Here, we reported on two camptothecin metabolic engineering strategies paving the road for industrial-scale production of camptothecin in CPT-producing plants.
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    Cited: Web of Science(2)

    In Ophiorrhiza pumila, the transcription OpNAC1 factor negatively regulates biosynthesis of the anticancer drug camptothecin by directly suppressing the expression of the loganic acid O-methyltransferase gene OpLAMT1. Four key residues of OpLAMT1 are important for catalyzing the reaction of loganic acid to loganin.

      
    Plant cell totipotency: Insights into cellular reprogramming
    Ying Hua Su, Li Ping Tang, Xiang Yu Zhao and Xian Sheng Zhang
    J Integr Plant Biol 2021, 63 (1): 228-243.  
    doi: 10.1111/jipb.12972
    Abstract (Browse 861)  |   Save
    Plant cells have a powerful capacity in their propagation to adapt to environmental change, given that a single plant cell can give rise to a whole plant via somatic embryogenesis without the need for fertilization. The reprogramming of somatic cells into totipotent cells is a critical step in somatic embryogenesis. This process can be induced by stimuli such as plant hormones, transcriptional regulators and stress. Here, we review current knowledge on how the identity of totipotent cells is determined and the stimuli required for reprogramming of somatic cells into totipotent cells. We highlight key molecular regulators and associated networks that control cell fate transition from somatic to totipotent cells. Finally, we pose several outstanding questions that should be addressed to enhance our understanding of the mechanisms underlying plant cell totipotency.
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    The outstanding characteristic of plant cells is recognized as their totipotency that can generate the adult organisms without fertilization. We summarize the basic understanding of how the somatic cells are reprogrammed into totipotent cells and highlight a possible network that potentially determine molecular state of the totipotent cells.
      
    Exploring the diversity of plant proteome
    Yanmei Chen, Yi Wang, Jun Yang, Wenbin Zhou and Shaojun Dai
    J Integr Plant Biol 2021, 63 (7): 1197-1210.  
    DOI: 10.1111/jipb.13087
    Abstract (Browse 850)  |   Save
    The tremendous functional, spatial, and temporal diversity of the plant proteome is regulated by multiple factors that continuously modify protein abundance, modifications, interactions, localization, and activity to meet the dynamic needs of plants. Dissecting the proteome complexity and its underlying genetic variation is attracting increasing research attention. Mass spectrometry (MS)-based proteomics has become a powerful approach in the global study of protein functions and their relationships on a systems level. Here, we review recent breakthroughs and strategies adopted to unravel the diversity of the proteome, with a specific focus on the methods used to analyze posttranslational modifications (PTMs), protein localization, and the organization of proteins into functional modules. We also consider PTM crosstalk and multiple PTMs temporally regulating the life cycle of proteins. Finally, we discuss recent quantitative studies using MS to measure protein turnover rates and examine future directions in the study of the plant proteome.
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    Mass spectrometry is an essential tool in proteomics. Here, we describe the types of mass spectrometry-based methods that are currently used in to plant proteomics research.
      
    Rice FLOURY ENDOSPERM 18 encodes a pentatricopeptide repeat protein required for 5′ processing of mitochondrial nad5 messenger RNA and endosperm development
    Mingzhou Yu, Mingming Wu, Yulong Ren, Yihua Wang, Jingfang Li, Cailin Lei, Yinglun Sun, Xiuhao Bao, Hongming Wu, Hang Yang, Tian Pan, Yongfei Wang, Ruonan Jing, Mengyuan Yan, Houda Zhang, Lei Zhao, Zhichao Zhao, Xin Zhang, Xiuping Guo, Zhijun Cheng, Bing Yang, Ling Jiang and Jianmin Wan
    J Integr Plant Biol 2021, 63 (5): 834-847.  
    DOI: 10.1111/jipb.13049
    Abstract (Browse 849)  |   Save
    Pentatricopeptide repeat (PPR) proteins, composing one of the largest protein families in plants, are involved in RNA binding and regulation of organelle RNA metabolism at the post‐transcriptional level. Although several PPR proteins have been implicated in endosperm development in rice (Oryza sativa), the molecular functions of many PPRs remain obscure. Here, we identified a rice endosperm mutant named floury endosperm 18 (flo18) with pleiotropic defects in both reproductive and vegetative development. Map‐based cloning and complementation tests showed that FLO18 encodes a mitochondrion‐targeted P‐type PPR protein with 15 PPR motifs. Mitochondrial function was disrupted in the flo18 mutant, as evidenced by decreased assembly of Complex I in the mitochondrial electron transport chain and altered mitochondrial morphology. Loss of FLO18 function resulted in defective 5′‐end processing of mitochondrial nad5 transcripts encoding subunit 5 of nicotinamide adenine dinucleotide hydrogenase. These results suggested that FLO18 is involved in 5′‐end processing of nad5 messenger RNA and plays an important role in mitochondrial function and endosperm development.
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    Pentatricopeptide repeat (PPR) proteins, one of the largest protein families in plants, are involved in RNA binding and regulation of organelle RNA metabolism. The rice mitochondria-localized P-type PPR protein FLOURY ENDOSPERM 18 is required for 5′-end processing of nad5 mRNA and endosperm development.
      
    GmPIN1-mediated auxin asymmetry regulates leaf petiole angle and plant architecture in soybean
    Zhongqin Zhang, Le Gao, Meiyu Ke, Zhen Gao, Tianli Tu, Laimei Huang, Jiaomei Chen, Yuefeng Guan, Xi Huang and Xu Chen
    J Integr Plant Biol 2022, 64 (7): 1325-1338.  
    doi: 10.1111/jipb.13269
    Abstract (Browse 836)  |   Save

    Crop breeding during the Green Revolution resulted in high yields largely due to the creation of plants with semi-dwarf architectures that could tolerate high-density planting. Although semi-dwarf varieties have been developed in rice, wheat and maize, none was reported in soybean (Glycine max), and few genes controlling plant architecture have been characterized in soybean. Here, we demonstrate that the auxin efflux transporter PINFORMED1 (GmPIN1), which determines polar auxin transport, regulates the leaf petiole angle in soybean. CRISPR-Cas9-induced Gmpin1abc and Gmpin1bc multiple mutants displayed a compact architecture with a smaller petiole angle than wild-type plants. GmPIN1 transcripts and auxin were distributed asymmetrically in the petiole base, with high levels of GmPIN1a/c transcript and auxin in the lower cells, which resulted in asymmetric cell expansion. By contrast, the (iso)flavonoid content was greater in the upper petiole cells than in the lower cells. Our results suggest that (iso)flavonoids inhibit GmPIN1a/c expression to regulate the petiole angle. Overall, our study demonstrates that a signal cascade that integrates (iso)flavonoid biosynthesis, GmPIN1a/c expression, auxin accumulation, and cell expansion in an asymmetric manner creates a desirable petiole curvature in soybean. This study provides a genetic resource for improving soybean plant architecture.

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    Cited: Web of Science(16)
    The auxin efflux transporter PINFORMED1 (GmPIN1) determines polar auxin transport and regulates leaf petiole angle in soybean. Asymmetric (iso)flavonoid biosynthesis, GmPIN1a/c expression, auxin accumulation, and cell expansion create desirable petiole curvature in soybean.
      
    Developmental pathways for shaping spike inflorescence architecture in barley and wheat
    Ravi Koppolu and Thorsten Schnurbusch
    J Integr Plant Biol 2019, 61 (3): 278-295.  
    doi: 10.1111/jipb.12771
    Abstract (Browse 834)  |   Save
    Grass species display a wide array of inflorescences ranging from highly branched compound/panicle inflorescences to unbranched spike inflorescences. The unbranched spike is a characteristic feature of the species of tribe Triticeae, including economically important crops, such as wheat and barley. In this review, we describe two important developmental genetic mechanisms regulating spike inflorescence architecture in barley and wheat. These include genetic regulation of (i) row-type pathway specific to Hordeum species and (ii) unbranched spike development in barley and wheat. For a comparative understanding, we describe the branched inflorescence phenotypes of rice and maize along with unbranched Triticeae inflorescences. In the end, we propose a simplified model describing a probable mechanism leading to unbranched spike formation in Triticeae species.
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    Grass inflorescences display spectacular diversity of form ranging from branched panicle to unbranched spike inflorescences. This review highlights the mechanisms of unbranched spike formation in wheat and barley with a particular focus on genes negatively influencing branch outgrowth in these species. We put forth a phytomeric model defining probable derivation of unbranched spike from branched grass inflorescences.
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